INNER CODE UNIT · Python

main

BirolLab/straglr · straglr.py:56

def main():
    args = parse_args()

    if args.tmpdir:
        tempfile.tempdir = args.tmpdir

    #min_cluster_size = args.min_cluster_size if args.min_cluster_size < args.min_support else args.min_support

    sex = args.sex[0].lower()
    if sex != 'm':
        sex = 'f'
    tre_finder = TREFinder(args.bam,
                           args.genome_fasta,
                           args.flank_size,
                           nprocs=args.nprocs,
                           reads_fasta=args.reads_fasta,
                           max_str_len=args.max_str_len,
                           min_str_len=args.min_str_len,

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