INNER CODE UNIT · Python

test_allele

BirolLab/straglr · straglr_compare.py:133

            test_allele = float(test_cols[i-1])
            if float(test_cols[i-1]) - ref_size < min_expansion:
                continue

            # loop thru controls
            not_expanded = False
            control_cols = cols[9:9+10]
            control_pvals = []

            # loop thru control alleles
            for j in range(-3, 0, 2):
                if control_cols[j] == '-':
                    continue
               
                control_allele = float(control_cols[j-1])
                if not control_allele in control_alleles:
                    control_alleles.append(control_allele)
                control_calls = list(map(float, control_cols[j].split(',')))

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