INNER CODE UNIT · Python

ncols

BirolLab/straglr · straglr_compare.py:25

    ncols = 5 + 2 * max_num_alleles
    for locus in loci:
        cols = list(locus)
        for allele in sorted(loci[locus]):
            cols.extend([str(allele), loci[locus][allele]])
        if len(cols) < ncols:
            cols.extend(['-'] * (ncols - len(cols)))
        bed_str += '{}\n'.format('\t'.join(cols))

    return BedTool(bed_str, from_string=True).sort()

def create_simple_bed(loci):
    bed_str = ''
    for locus in loci:
        bed_str += '{}\n'.format('\t'.join(list(map(str, locus[:3]))))

    return BedTool(bed_str, from_string=True).sort()

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