INNER CODE UNIT · Python

copy_num

BirolLab/straglr · straglr_compare.py:74

            copy_num = cols[-6]
            if old_version:
                size = cols[-3]
                copy_num = cols[-4]
            
            if use_size:
                alleles[locus][allele].append(size)
            else:
                alleles[locus][allele].append(copy_num)

    return create_straglr_bed(alleles)

def vs_each_control(test_bed, control_bed, pval_cutoff, min_expansion=0, min_support=0, label=None):
    expanded_loci = {}
    new_loci = []
    common_loci = []
    for cols in test_bed.intersect(control_bed, loj=True, wao=True, f=0.9):
        if cols[-2] == '.':

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