INNER CODE UNIT · Python

allele

BirolLab/straglr · straglr_compare.py:67

            allele = cols[-1] if old_version else cols[-2]
            if allele == '-' or allele == 'NA':
                continue
            if not use_size:
                allele = '{:.1f}'.format(float(allele) / len(cols[3]))
            
            size = cols[-5]
            copy_num = cols[-6]
            if old_version:
                size = cols[-3]
                copy_num = cols[-4]
            
            if use_size:
                alleles[locus][allele].append(size)
            else:
                alleles[locus][allele].append(copy_num)

    return create_straglr_bed(alleles)

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