INNER CODE UNIT · Python

main

BirolLab/straglr · extract_repeats.py:70

def main():
    args = parse_args()
    support = parse_tsv(args.tsv, args.locus)
    bam = pysam.AlignmentFile(args.bam)
    seqs = extract_repeats(bam, support, flank_size=args.flank)
    report(seqs, args.out)

main()

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