INNER CODE UNIT · Python

binning_long

BigDataBiology/SemiBin · SemiBin/main.py:1195

def binning_long(logger, data, minfasta, binned_length, contig_dict,
        model_path, output, device, environment, *, args):
    from .long_read_cluster import cluster_long_read
    logger.info('Start binning.')
    is_combined, n_sample, data, model = binning_preprocess(data, getattr(args, 'depth_metabat2', None), model_path, environment, device)
    cluster_long_read(logger,
                      model,
                      data,
                      device,
                      is_combined,
                      n_sample,
                      output,
                      contig_dict,
                      binned_length=binned_length,
                      minfasta=minfasta,
                      args=args,
                      )

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