INNER CODE UNIT · C

max

aquaskyline/SOAPdenovo2 · fusion/bundle.c:235

  						max=tmp->PE[ii];
  						maxid=ii;
  					}
  					if(tmp->PE[ii]<=min){
  						min=tmp->PE[ii];
  						minid=ii;
  					}
  				}
  				int sum=0;
  				for(ii=0;ii<weight;ii++){
  					if(ii!=maxid&&ii!=minid){
  						sum+=tmp->PE[ii];
  					}
  				}
  				//ignorePE4+=2;
  				tmp->gapLen=sum/(weight-2);
  				//fprintf(stderr,"estimating contigs' gap by removing max&min PE ,with max&min %d %d\n",
  					//tmp->PE[maxid],tmp->PE[minid]);

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