INNER CODE UNIT · C

gap

aquaskyline/SOAPdenovo2 · fusion/bundle.c:145

  gap = insert_size - overlaplen + pre_pos + pos - contig_array[e1].length - contig_array[e2].length;
  //fprintf(stderr,"[%s]\t%d\t%d\tgap\t%d\t%d\t%d\t%d\n",__FUNCTION__,e1,e2,gap,contig_array[e1].bal_edge,contig_array[e2].bal_edge,insert_size);
  //if(gap<-(insert_size/10)){
  //	//ignorePE2++;
  //	return 0;
  //}
  bun1AccuConnect(e1, e2, gap, 1);
  bun1AccuConnect(bal_e2, bal_e1, gap, 1);

  return 1;
}

static int inputPE(FILE *fp, int peGrad, char *line)
{
  long long pre_readno, readno, minno, maxno;
  int pre_pos, pos, flag, PE, count = 0;
  unsigned int pre_contigno, contigno, newIndex;

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