INNER CODE UNIT · C

realpeSize

aquaskyline/SOAPdenovo2 · fusion/attachPEinfo.c:321

      realpeSize = contig_array[e1].length + overlaplen - pre_pos - pos;

      if(realpeSize > 0)
        {
          peSUM += realpeSize;
          onsameCtgPE++;

          if((int)contig_array[e1].length > insert_size)
            {
              int *item = (int *)stackPush(isStack);
              (*item) = realpeSize;
            }
        }

      return 2;
    }

  gap = insert_size - overlaplen + pre_pos + pos - contig_array[e1].length - contig_array[e2].length;

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