INNER CODE UNIT · Python

main

aquaskyline/Clairvoyante · clairvoyante/calTrainDevDiff.py:84

def main():
    parser = argparse.ArgumentParser(
            description="Calculate the loss different between training dataset and validation dataset" )

    parser.add_argument('--bin_fn', type=str, default = None,
            help="Binary tensor input generated by tensor2Bin.py, tensor_fn, var_fn and bed_fn will be ignored")

    parser.add_argument('--tensor_fn', type=str, default = "vartensors",
            help="Tensor input")

    parser.add_argument('--var_fn', type=str, default = "truthvars",
            help="Truth variants list input")

    parser.add_argument('--bed_fn', type=str, default = None,
            help="High confident genome regions input in the BED format")

    parser.add_argument('--chkpnt_fn', nargs='+', type=str, default = None,
            help="Input a list of checkpoint for calculation")

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