INNER CODE UNIT · Python

Test

aquaskyline/Clairvoyante · clairvoyante/callVar.py:180

def Test(args, m, utils):
    call_fh = open(args.call_fn, "w")
    if args.v2 == True or args.v3 == True:
        PrintVCFHeader(args, call_fh)
    tensorGenerator = utils.GetTensor( args.tensor_fn, param.predictBatchSize )
    logging.info("Calling variants ...")
    predictStart = time.time()
    end = 0; end2 = 0; terminate = 0
    end2, num2, XBatch2, posBatch2 = next(tensorGenerator)
    m.predictNoRT(XBatch2)
    base = m.predictBaseRTVal; z = m.predictZygosityRTVal; t = m.predictVarTypeRTVal; l = m.predictIndelLengthRTVal
    if end2 == 0:
        end = end2; num = num2; XBatch = XBatch2; posBatch = posBatch2
        end2, num2, XBatch2, posBatch2 = next(tensorGenerator)
        while True:
            if end == 1:
                terminate = 1
            threadPool = []

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