INNER CODE UNIT · Python
_tag
antigenomics/vdjtools · python/vdjtools/cli/__init__.py:138
def _tag(df: pl.DataFrame, sample_id: str) -> pl.DataFrame:
return df.with_columns(pl.lit(sample_id).alias("sample_id")).select(
["sample_id", *[c for c in df.columns if c != "sample_id"]]
)
# ---------------------------------------------------------------------------- model commands
@app.command()
def models() -> None:
"""List the precomputed recombination models shipped with the package."""
from vdjtools.model import list_bundled
for src, loci in list_bundled().items():
typer.echo(f"{src:8s} {' '.join(loci) if loci else '(none)'}")
@app.command()
def pgen(